PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0217s00170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 359aa    MW: 38484.7 Da    PI: 6.5169
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0217s00170.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.47.2e-082253255
               AP2 32 slgkfgtaeeAakaaiaarkkleg 55
                      +lg++ taeeAa+a+++a+  l+g
  Vang0217s00170.1  2 WLGTYQTAEEAARAYDEAACLLRG 25
                      9******************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.68E-15132No hitNo description
PROSITE profilePS5103212.102133IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-9134IPR016177DNA-binding domain
SMARTSM003808.5E-5139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-14133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MWLGTYQTAE EAARAYDEAA CLLRGSNTRT NFSTQPCTTI ATNSPISLKL RNLLHRKAMS  60
NQTQVQNQPS GVSPSLQGAT TPNGSTMNNI MVMEETSAFG GEGDKSLFVV QNQVSDNMYG  120
LDMNMINCVM GITPDASQLD FSSWPFAQQR INELPLPKDG FSVERQLSDS SLLNTFDEEE  180
SSEMAFSGVE GRSSSESTSS SYSSAFPNRS HSISLSPPVS ISPRRSQPKS SEKIVAHHSP  240
PPPPAAIRRS SSLYTWSSPL LGFGHHMLSS SSISFKGSVS QLPSLSSLSL SPRKNPNPNP  300
DGESSPKLVL LEKTQSFGSS KSKSDIGSSR LSNASFTGKS SAFSLSLDQS PTIFDVSD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF156461010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-10related to AP2 11